If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ), 'gf_id' => 'HOM05D000933', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000933' ), 'data_identifier' => 'HOM05D000933', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000933', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13820' => 'bna', 'A02p21770' => 'bna', 'A03p27960' => 'bna', 'A03p29700' => 'bna', 'A06p08590' => 'bna', 'A08p15790' => 'bna', 'A09p30360' => 'bna', 'Aa31LG1G1630' => 'aar', 'Aa31LG4G7840' => 'aar', 'Aa31LG6G4550' => 'aar', 'Aa31LG6G9130' => 'aar', 'Aa31LG9G14400' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1830' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.532' => 'aag', 'Actinidia02599' => 'ach', 'Actinidia03503' => 'ach', 'Actinidia05195' => 'ach', 'Actinidia05196' => 'ach', 'Actinidia07456' => 'ach', 'Actinidia15120' => 'ach', 'Actinidia27460' => 'ach', 'Actinidia28396' => 'ach', 'Actinidia29440' => 'ach', 'Actinidia37456' => 'ach', 'Ah.02g116850' => 'amhyb', 'Ah.02g116860' => 'amhyb', 'Ah.05g172370' => 'amhyb', 'Ah.12g056570' => 'amhyb', 'AL1G24850' => 'aly', 'AL2G37960' => 'aly', 'AL4G26050' => 'aly', 'AL4G26120' => 'aly', 'AL6G41830' => 'aly', 'AL6G47250' => 'aly', 'AL6G47340' => 'aly', 'AL7G31070' => 'aly', 'Aqoxy5G02430' => 'aox', 'Aqoxy5G03635' => 'aox', 'Aqoxy6G00148' => 'aox', 'Aqoxy6G02653' => 'aox', 'Aqoxy7G00734' => 'aox', 'arahy.Tifrunner.gnm1.ann1.690JG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69ELPC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A478T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.963ELH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1AI4N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6C6I8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8ATBD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NIP5ZI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PBS4MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RU0P4R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TER3A1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WY8I0W' => 'arhy', 'AT1G13170' => 'ath', 'AT1G77730' => 'ath', 'AT2G31020' => 'ath', 'AT2G31030' => 'ath', 'AT4G08180' => 'ath', 'AT4G12460' => 'ath', 'AT4G22540' => 'ath', 'ATR0684G120' => 'atr', 'ATR0824G126' => 'atr', 'ATR1153G110' => 'atr', 'Atru.chr11.2188' => 'acertr', 'Atru.chr13.1336' => 'acertr', 'Atru.chr13.1379' => 'acertr', 'Atru.chr4.1134' => 'acertr', 'Atru.chr9.1344' => 'acertr', 'AUR62004706' => 'cqu', 'AUR62005524' => 'cqu', 'AUR62007490' => 'cqu', 'AUR62023622' => 'cqu', 'AUR62024215' => 'cqu', 'AUR62039944' => 'cqu', 'BcaB01g01274' => 'bca', 'BcaB01g02641' => 'bca', 'BcaB01g02873' => 'bca', 'BcaB02g07433' => 'bca', 'BcaB02g07965' => 'bca', 'BcaB02g08743' => 'bca', 'BcaB03g11733' => 'bca', 'BcaB04g17069' => 'bca', 'BcaB05g22005' => 'bca', 'BcaB05g22065' => 'bca', 'BcaB05g22066' => 'bca', 'BcaB05g25070' => 'bca', 'BcaB06g27928' => 'bca', 'BcaB08g35812' => 'bca', 'BcaC01g00781' => 'bca', 'BcaC01g04591' => 'bca', 'BcaC01g04780' => 'bca', 'BcaC02g11252' => 'bca', 'BcaC03g15764' => 'bca', 'BcaC04g20878' => 'bca', 'BcaC05g25079' => 'bca', 'BcaC05g25080' => 'bca', 'BcaC05g25413' => 'bca', 'BcaC09g51123' => 'bca', 'BolC1t01626H' => 'bol', 'BolC2t09521H' => 'bol', 'BolC3t15695H' => 'bol', 'BolC3t15905H' => 'bol', 'BolC3t20702H' => 'bol', 'BolC5t29764H' => 'bol', 'BolC5t30036H' => 'bol', 'BolC5t30037H' => 'bol', 'BolC9t56663H' => 'bol', 'BraA01t01328Z' => 'bra', 'BraA02t07182Z' => 'bra', 'BraA03t12009Z' => 'bra', 'BraA03t12164Z' => 'bra', 'BraA06t24053Z' => 'bra', 'BraA08t33557Z' => 'bra', 'BraA09t38606Z' => 'bra', 'C01p16850' => 'bna', 'C02p35030' => 'bna', 'C03p33760' => 'bna', 'C03p35960' => 'bna', 'C03p84230' => 'bna', 'C04p18610' => 'bna', 'C04p18780' => 'bna', 'C05p10190' => 'bna', 'C05p12890' => 'bna', 'C09p38230' => 'bna', 'CAN.G1190.12' => 'can', 'CAN.G1217.7' => 'can', 'CAN.G392.5' => 'can', 'CAN.G49.3' => 'can', 'CAN.G551.14' => 'can', 'CAN.G678.13' => 'can', 'CANSAT01G2129' => 'cansat', 'CANSAT01G2510' => 'cansat', 'CANSAT21G1177' => 'cansat', 'CANSAT25G3471' => 'cansat', 'CANSAT35G0584' => 'cansat', 'CANSAT54G1101' => 'cansat', 'CARHR013540' => 'chi', 'CARHR071240' => 'chi', 'CARHR124550' => 'chi', 'CARHR229430' => 'chi', 'CARHR253740' => 'chi', 'CARHR259310' => 'chi', 'CARHR285930' => 'chi', 'Carub.0001s1290' => 'cru', 'Carub.0002s2462' => 'cru', 'Carub.0004s1223' => 'cru', 'Carub.0006s2673' => 'cru', 'Carub.0006s3162' => 'cru', 'Carub.0007s1877' => 'cru', 'Ca_15217_v3' => 'car', 'Ca_17018_v3' => 'car', 'Ca_25127_v3' => 'car', 'Ca_25933_v3' => 'car', 'Ca_29644_v3' => 'car', 'Ca_30150_v3' => 'car', 'CBR_g34321' => 'cbr', 'CBR_g79694' => 'cbr', 'CBR_g8293' => 'cbr', 'CBR_g8295' => 'cbr', 'CBR_g8297' => 'cbr', 'Cc08_g12810' => 'ccan', 'Cc10_g10560' => 'ccan', 'Cc11_g16160' => 'ccan', 'CDE02G0782' => 'cde', 'CDE02G1823' => 'cde', 'CDE02G2302' => 'cde', 'CDE02G4275' => 'cde', 'CDE02G4425' => 'cde', 'CDE05G0470' => 'cde', 'CDE05G1778' => 'cde', 'CDE06G2631' => 'cde', 'CDE09G1405' => 'cde', 'CDE11G0320' => 'cde', 'CDE11G0327' => 'cde', 'Cfa002228' => 'cfa', 'Cfa009261' => 'cfa', 'Cfa010083' => 'cfa', 'Cfa012000' => 'cfa', 'Cfa015973' => 'cfa', 'Cfa017154' => 'cfa', 'Cfa022605' => 'cfa', 'Ciclev10000313m.g' => 'ccl', 'Ciclev10018970m.g' => 'ccl', 'Ciclev10024939m.g' => 'ccl', 'Ciclev10030736m.g' => 'ccl', 'CiPaw.03G254000' => 'cil', 'CiPaw.05G176700' => 'cil', 'CiPaw.05G227300' => 'cil', 'CiPaw.06G026200' => 'cil', 'CiPaw.11G071000' => 'cil', 'CiPaw.11G151600' => 'cil', 'CiPaw.12G108000' => 'cil', 'ClCG01G003910' => 'cla', 'ClCG03G009340' => 'cla', 'ClCG05G026120' => 'cla', 'ClCG10G002920' => 'cla', 'COL.COLO4_03316' => 'col', 'COL.COLO4_03563' => 'col', 'COL.COLO4_23533' => 'col', 'COL.COLO4_37199' => 'col', 'COL.COLO4_38236' => 'col', 'Cpa.g.c47438' => 'cpa', 'Cpa.g.sc1025.1' => 'cpa', 'Cpa.g.sc1025.2' => 'cpa', 'Cpa.g.sc33.81' => 'cpa', 'Cpa.g.sc33.82' => 'cpa', 'Cpa.g.sc36.8' => 'cpa', 'Cre09.g392750' => 'cre', 'Cre16.g653700' => 'cre', 'CsaV3_3G002980' => 'csa', 'CsaV3_5G004040' => 'csa', 'CsaV3_5G023280' => 'csa', 'CsaV3_5G030730' => 'csa', 'CSS0003564' => 'camsi', 'CSS0006738' => 'camsi', 'CSS0009265' => 'camsi', 'CSS0016736' => 'camsi', 'CSS0022267' => 'camsi', 'CSS0030110' => 'camsi', 'CSS0031815' => 'camsi', 'CSS0031846' => 'camsi', 'CSS0049448' => 'camsi', 'CSS0049828' => 'camsi', 'DCAR_004933' => 'dca', 'DCAR_008468' => 'dca', 'DCAR_014117' => 'dca', 'DCAR_024100' => 'dca', 'DCAR_027792' => 'dca', 'DCAR_031248' => 'dca', 'Dinv04831' => 'din', 'Dinv07922' => 'din', 'Dinv11032' => 'din', 'Dinv14755' => 'din', 'Dinv21612' => 'din', 'Dinv25598' => 'din', 'Dinv27373' => 'din', 'Dinv39117' => 'din', 'Duzib041G0779' => 'dzi', 'Duzib068G1446' => 'dzi', 'Duzib084G1293' => 'dzi', 'Duzib093G0948' => 'dzi', 'Duzib116G0682' => 'dzi', 'Duzib205G1561' => 'dzi', 'Duzib248G0384' => 'dzi', 'Duzib251G0334' => 'dzi', 'ECA232G4535' => 'eca', 'ECA233G2300' => 'eca', 'ECA234G4320' => 'eca', 'ECA246G1675' => 'eca', 'EL10Ac1g00024' => 'bvu', 'EL10Ac2g02878' => 'bvu', 'EL10Ac5g13023' => 'bvu', 'EL10As2g23186' => 'bvu', 'Eucgr.B03240' => 'egr', 'Eucgr.D02035' => 'egr', 'Eucgr.F03748' => 'egr', 'Eucgr.F04373' => 'egr', 'FAN04G1382' => 'fan', 'FAN07G0497' => 'fan', 'FAN08G3257' => 'fan', 'FAN12G0596' => 'fan', 'FAN13G0753' => 'fan', 'FAN15G2644' => 'fan', 'FAN17G1979' => 'fan', 'FAN18G2979' => 'fan', 'FAN20G1543' => 'fan', 'FAN22G0868' => 'fan', 'FAN24G1976' => 'fan', 'FAN27G0544' => 'fan', 'FvH4_2g26250' => 'fve', 'FvH4_4g25220' => 'fve', 'FvH4_5g00160' => 'fve', 'Glyma.01G210600' => 'gma', 'Glyma.04G206000' => 'gma', 'Glyma.04G253000' => 'gma', 'Glyma.05G056800' => 'gma', 'Glyma.06G109500' => 'gma', 'Glyma.06G159600' => 'gma', 'Glyma.10G111000' => 'gma', 'Glyma.11G031400' => 'gma', 'Glyma.11G244600' => 'gma', 'Glyma.13G083300' => 'gma', 'Glyma.14G164600' => 'gma', 'Glyma.17G139200' => 'gma', 'Glyma.18G012500' => 'gma', 'Glyma.19G041525' => 'gma', 'Gohir.A02G074400' => 'ghi', 'Gohir.A03G009300' => 'ghi', 'Gohir.A03G132000' => 'ghi', 'Gohir.A05G236300' => 'ghi', 'Gohir.A05G268700' => 'ghi', 'Gohir.A06G041600' => 'ghi', 'Gohir.A09G195700' => 'ghi', 'Gohir.A11G026300' => 'ghi', 'Gohir.D02G081566' => 'ghi', 'Gohir.D02G156100' => 'ghi', 'Gohir.D03G161600' => 'ghi', 'Gohir.D05G234600' => 'ghi', 'Gohir.D05G270400' => 'ghi', 'Gohir.D06G042500' => 'ghi', 'Gohir.D09G190300' => 'ghi', 'Gohir.D11G025676' => 'ghi', 'Gorai.003G170200' => 'gra', 'Gorai.005G091400' => 'gra', 'Gorai.005G174900' => 'gra', 'Gorai.006G212900' => 'gra', 'Gorai.007G027800' => 'gra', 'Gorai.009G242900' => 'gra', 'Gorai.009G283100' => 'gra', 'Gorai.010G047800' => 'gra', 'GSVIVG01000586001' => 'vvi', 'GSVIVG01001290001' => 'vvi', 'GSVIVG01001291001' => 'vvi', 'GSVIVG01008930001' => 'vvi', 'GSVIVG01022401001' => 'vvi', 'HanXRQChr02g0049511' => 'han', 'HanXRQChr05g0133801' => 'han', 'HanXRQChr06g0164261' => 'han', 'HanXRQChr08g0235941' => 'han', 'HanXRQChr09g0260651' => 'han', 'HanXRQChr11g0326041' => 'han', 'HanXRQChr13g0394791' => 'han', 'HanXRQChr17g0549971' => 'han', 'HanXRQChr17g0549981' => 'han', 'HanXRQChr17g0569631' => 'han', 'Haze_00502' => 'cav', 'Haze_07871' => 'cav', 'Haze_12294' => 'cav', 'Haze_23686' => 'cav', 'Haze_25092' => 'cav', 'Haze_25405' => 'cav', 'Haze_25406' => 'cav', 'Haze_26939' => 'cav', 'Hma1.2p1_0079F.1_g041270' => 'hma', 'Hma1.2p1_0310F.1_g121060' => 'hma', 'Hma1.2p1_0753F.1_g212930' => 'hma', 'HPP92_005834' => 'vpl', 'HPP92_005851' => 'vpl', 'HPP92_005852' => 'vpl', 'HPP92_009358' => 'vpl', 'HPP92_015031' => 'vpl', 'HPP92_024532' => 'vpl', 'Hund01637' => 'sun', 'Hund11585' => 'sun', 'Hund14592' => 'sun', 'Hund16829' => 'sun', 'Hund25411' => 'sun', 'Hund27048' => 'sun', 'Lalb_Chr05g0225601' => 'lal', 'Lalb_Chr08g0237781' => 'lal', 'Lalb_Chr08g0237791' => 'lal', 'Lalb_Chr08g0241641' => 'lal', 'Lalb_Chr11g0065741' => 'lal', 'Lalb_Chr16g0379651' => 'lal', 'Lalb_Chr16g0379671' => 'lal', 'Lalb_Chr16g0389461' => 'lal', 'Lalb_Chr16g0389471' => 'lal', 'Lalb_Chr17g0343961' => 'lal', 'Lalb_Chr23g0270801' => 'lal', 'Lalb_Chr23g0270811' => 'lal', 'Lalb_Chr23g0277741' => 'lal', 'Lj1g0006593' => 'lja', 'Lj1g0022312' => 'lja', 'Lj1g0027792' => 'lja', 'Lj2C214T1' => 'lonja', 'Lj3C1062T10' => 'lonja', 'Lj4A828T48' => 'lonja', 'Lj4g0012769' => 'lja', 'Lj6g0021419' => 'lja', 'Lj7A311T40' => 'lonja', 'Lj7A323T21' => 'lonja', 'Lj7C311G6' => 'lonja', 'Lj7C323G4' => 'lonja', 'Lj8A259T62' => 'lonja', 'Lj8C259G3' => 'lonja', 'Lsat_1_v5_gn_3_1420' => 'lsa', 'Lsat_1_v5_gn_4_134040' => 'lsa', 'Lsat_1_v5_gn_4_3621' => 'lsa', 'Lsat_1_v5_gn_6_112760' => 'lsa', 'Lsat_1_v5_gn_6_2800' => 'lsa', 'Manes.01G057000' => 'mes', 'Manes.01G077700' => 'mes', 'Manes.02G037200' => 'mes', 'Manes.02G159800' => 'mes', 'Manes.12G019400' => 'mes', 'Manes.18G073689' => 'mes', 'Mapoly0118s0012' => 'mpo', 'Mapoly0187s0011' => 'mpo', 'MBI02_g42114_MAGBIO' => 'mbi', 'MBI03_g28298_MAGBIO' => 'mbi', 'MBI06_g01066_MAGBIO' => 'mbi', 'MBI10_g10430_MAGBIO' => 'mbi', 'MBI16_g40945_MAGBIO' => 'mbi', 'MBI19_g01952_MAGBIO' => 'mbi', 'MCO04G332' => 'mco', 'MD00G1220800' => 'mdo', 'MD04G1086100' => 'mdo', 'MD06G1062300' => 'mdo', 'MD08G1170000' => 'mdo', 'MD13G1105800' => 'mdo', 'MD15G1356900' => 'mdo', 'MD15G1357000' => 'mdo', 'MD16G1106000' => 'mdo', 'Medtr3g073040' => 'mtr', 'Medtr3g086340' => 'mtr', 'Medtr3g097270' => 'mtr', 'Medtr4g101410' => 'mtr', 'Medtr5g459350' => 'mtr', 'MELO3C003055.2' => 'cme', 'MELO3C005554.2' => 'cme', 'MELO3C011915.2' => 'cme', 'MELO3C013961.2' => 'cme', 'MELO3C019329.2' => 'cme', 'Migut.C01179' => 'egut', 'Migut.E00852' => 'egut', 'Migut.E01669' => 'egut', 'Migut.K00635' => 'egut', 'Migut.N03314' => 'egut', 'MSTRG.13780' => 'ama', 'MSTRG.1479' => 'ama', 'MSTRG.22424' => 'ama', 'MSTRG.24151' => 'ama', 'MSTRG.25404' => 'ama', 'MSTRG.7956' => 'ama', 'Nitab4.5_0000041g0100' => 'nta', 'Nitab4.5_0000193g0080' => 'nta', 'Nitab4.5_0000312g0390' => 'nta', 'Nitab4.5_0000494g0020' => 'nta', 'Nitab4.5_0001036g0060' => 'nta', 'Nitab4.5_0002545g0090' => 'nta', 'Nitab4.5_0002587g0010' => 'nta', 'Nitab4.5_0006719g0050' => 'nta', 'Nitab4.5_0010169g0010' => 'nta', 'Nitab4.5_0012732g0010' => 'nta', 'Nn1g01068' => 'nnu', 'Nn1g01145' => 'nnu', 'Nn1g02722' => 'nnu', 'Nn1g07716' => 'nnu', 'Nn1g08656' => 'nnu', 'Nn3g16628' => 'nnu', 'Nn4g22516' => 'nnu', 'Nn5g28095' => 'nnu', 'Nn6g34022' => 'nnu', 'Oeu013546.1' => 'oeu', 'Oeu013547.1' => 'oeu', 'Oeu017721.1' => 'oeu', 'Oeu017723.1' => 'oeu', 'Oeu020365.1' => 'oeu', 'Oeu026135.1' => 'oeu', 'Oeu026495.1' => 'oeu', 'Oeu028580.1' => 'oeu', 'Oeu029335.3' => 'oeu', 'Oeu030034.2' => 'oeu', 'Oeu032966.1' => 'oeu', 'Oeu040220.3' => 'oeu', 'Oeu047921.1' => 'oeu', 'Oeu054488.4' => 'oeu', 'Os03g0704700' => 'osa', 'Os08g0154900' => 'osa', 'Os10g0554100' => 'osa', 'Os12g0285600' => 'osa', 'Peaxi162Scf00002g00107' => 'pax', 'Peaxi162Scf00038g00519' => 'pax', 'Peaxi162Scf00128g00624' => 'pax', 'Peaxi162Scf00177g01122' => 'pax', 'Peaxi162Scf00427g00115' => 'pax', 'PGR031G0565' => 'pgr', 'PGR042G2874' => 'pgr', 'PGR044G0492' => 'pgr', 'PGR102G1067' => 'pgr', 'PGSC0003DMG400004746' => 'stu', 'PGSC0003DMG400007817' => 'stu', 'PGSC0003DMG400010779' => 'stu', 'PGSC0003DMG400011216' => 'stu', 'PGSC0003DMG400029030' => 'stu', 'Phvul.001G256600' => 'pvu', 'Phvul.002G061800' => 'pvu', 'Phvul.003G218400' => 'pvu', 'Phvul.008G166800' => 'pvu', 'Phvul.009G121300' => 'pvu', 'Phvul.009G157300' => 'pvu', 'Potri.001G121700' => 'ptr', 'Potri.002G088000' => 'ptr', 'Potri.003G111600' => 'ptr', 'Potri.005G172900' => 'ptr', 'Potri.008G182766' => 'ptr', 'Potri.010G051400' => 'ptr', 'Potri.019G015111' => 'ptr', 'Pp3c10_21160' => 'ppa', 'Pp3c11_12290' => 'ppa', 'Pp3c1_16820' => 'ppa', 'Pp3c20_20980' => 'ppa', 'Pp3c23_13140' => 'ppa', 'Pp3c24_2390' => 'ppa', 'Pp3c24_2393' => 'ppa', 'Pp3c2_23290' => 'ppa', 'Pp3c7_14170' => 'ppa', 'PRCOL_00001637' => 'pco', 'PRCOL_00003231' => 'pco', 'PRCOL_00004772' => 'pco', 'Prupe.1G240400' => 'ppe', 'Prupe.1G504000' => 'ppe', 'Prupe.5G073700' => 'ppe', 'Psat2g079040' => 'psa', 'Psat4g072080' => 'psa', 'Psat5g057640' => 'psa', 'Psat5g092680' => 'psa', 'Psat5g134400' => 'psa', 'PSO017G2518' => 'pso', 'PSO063G1909' => 'pso', 'PSO067G0067' => 'pso', 'PSO170G0338' => 'pso', 'PSO764G0173' => 'pso', 'PSO832G3131' => 'pso', 'QL03p056124' => 'qlo', 'QL09p035814' => 'qlo', 'QL10p039221' => 'qlo', 'QL12p012994' => 'qlo', 'RcHm_v2.0_Chr2g0121881' => 'rch', 'RcHm_v2.0_Chr4g0403491' => 'rch', 'RcHm_v2.0_Chr4g0432411' => 'rch', 'RcHm_v2.0_Chr6g0262621' => 'rch', 'RcHm_v2.0_Chr6g0294861' => 'rch', 'RcHm_v2.0_Chr7g0176811' => 'rch', 'RcHm_v2.0_Chr7g0202721' => 'rch', 'RcHm_v2.0_Chr7g0222411' => 'rch', 'Rhsim08G0001100' => 'rsi', 'Rhsim08G0001200' => 'rsi', 'Rhsim08G0237600' => 'rsi', 'Rhsim11G0065900' => 'rsi', 'Sabra01G0093800' => 'sbr', 'Sabra02G0069300' => 'sbr', 'Sabra03G0077300' => 'sbr', 'Sabra05G0130400' => 'sbr', 'Sabra05G0130500' => 'sbr', 'Sabra10G0018700' => 'sbr', 'Sabra19G0006200' => 'sbr', 'Sabra19G0013200' => 'sbr', 'SalBow1G0541' => 'sbo', 'SalBow1G4689' => 'sbo', 'SalBow2G2046' => 'sbo', 'SalBow6G3473' => 'sbo', 'SalBow7G2183' => 'sbo', 'Sc01g0001450' => 'sci', 'Sc01g0009400' => 'sci', 'Sc11g0000820' => 'sci', 'Sc26g0000360' => 'sci', 'Sed0000872' => 'sed', 'Sed0001416' => 'sed', 'Sed0002623' => 'sed', 'Sed0006137' => 'sed', 'Sed0013461' => 'sed', 'Sed0020098' => 'sed', 'Sed0025456' => 'sed', 'SEGI_11071' => 'sgi', 'SEGI_14725' => 'sgi', 'SEGI_22218' => 'sgi', 'SEGI_26533' => 'sgi', 'SEGI_27330' => 'sgi', 'SEGI_27846' => 'sgi', 'SEGI_32798' => 'sgi', 'SEGI_36911' => 'sgi', 'SGA_v2.0_scaffold24G10497' => 'sas', 'SGA_v2.0_scaffold25G11101' => 'sas', 'SGA_v2.0_scaffold28G12018' => 'sas', 'SGA_v2.0_scaffold52G19011' => 'sas', 'SGA_v2.0_scaffold63G21745' => 'sas', 'SGA_v2.0_scaffold87G27101' => 'sas', 'SGA_v2.0_scaffold87G27104' => 'sas', 'SHI07204' => 'shi', 'SMO228G0119' => 'smo', 'SMO335G0015' => 'smo', 'SMO347G0362' => 'smo', 'Solyc05g013960.3' => 'sly', 'Solyc07g006100.4' => 'sly', 'Solyc08g078960.4' => 'sly', 'Solyc11g013190.2' => 'sly', 'Solyc12g010510.2' => 'sly', 'Sopen05g008890' => 'spe', 'Sopen07g002210' => 'spe', 'Sopen08g027450' => 'spe', 'Sopen11g008230' => 'spe', 'Sopen12g005520' => 'spe', 'Sp1g11690' => 'spa', 'Sp1g31440' => 'spa', 'Sp5g32900' => 'spa', 'Sp6g05090' => 'spa', 'Sp6g09920' => 'spa', 'Sp7g20570' => 'spa', 'TAR375G0605' => 'tar', 'TAR376G0568' => 'tar', 'TAR381G1156' => 'tar', 'TAR622G1065' => 'tar', 'TAR625G0005' => 'tar', 'TAR628G0818' => 'tar', 'TAR628G1164' => 'tar', 'THA.LOC104805265' => 'tha', 'THA.LOC104806338' => 'tha', 'THA.LOC104806810' => 'tha', 'THA.LOC104810125' => 'tha', 'THA.LOC104813675' => 'tha', 'THA.LOC104817051' => 'tha', 'Thecc.02G267100' => 'tca', 'Thecc.03G255300' => 'tca', 'Thecc.08G118400' => 'tca', 'Thhalv10006816m.g' => 'esa', 'Thhalv10019021m.g' => 'esa', 'Thhalv10024514m.g' => 'esa', 'Thhalv10028436m.g' => 'esa', 'Thhalv10028479m.g' => 'esa', 'TPR.G11224' => 'tpr', 'TPR.G28690' => 'tpr', 'TPR.G32956' => 'tpr', 'TPR.G37637' => 'tpr', 'TPR.G5657' => 'tpr', 'TPR.G8509' => 'tpr', 'TWI12G0627' => 'twi', 'TWI15G0342' => 'twi', 'TWI36G1747' => 'twi', 'TWI56G0406' => 'twi', 'TWI60G0195' => 'twi', 'TWI75G0133' => 'twi', 'TWI81G0668' => 'twi', 'unitig_0.g1236' => 'ugi', 'unitig_21.g20188' => 'ugi', 'unitig_22.g6731' => 'ugi', 'unitig_749.g13280' => 'ugi', 'vmacro14096' => 'vma', 'vmacro16159' => 'vma', 'vmacro18680' => 'vma', 'VMungo0251G1347' => 'vmu', 'VMungo0647G2121' => 'vmu', 'VMungo1215G0831' => 'vmu', 'VMungo1309G0697' => 'vmu', 'VMungo1309G2078' => 'vmu', 'VMungo1383G3170' => 'vmu', 'VMungo1383G3215' => 'vmu', 'Zm00001eb018590' => 'zma', 'Zm00001eb023140' => 'zma', 'Zm00001eb028310' => 'zma', 'Zm00001eb054410' => 'zma', 'Zm00001eb172630' => 'zma', 'Zm00001eb216680' => 'zma', 'Zm00001eb391540' => 'zma', 'Zm00001eb404390' => 'zma' ) $gf_id = 'HOM05D000933' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000933' ) $data_identifier = 'HOM05D000933' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 9, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 5, 'ccan' => (int) 3, 'cde' => (int) 11, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 14, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 8, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 13, 'lja' => (int) 5, 'lonja' => (int) 9, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 5, 'pso' => (int) 6, 'qlo' => (int) 4, 'rch' => (int) 8, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb404390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1